Menet Lab
Department of Biology, Texas A&M University
2023
Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schübeler D, Zuber J, Liu AC, Becker PB, Fierz B, Partch CL, Menet JS, Thomä NH. (2023) Cooperation between bHLH transcription factors and histones for DNA access. Nature. 619, 385-393. Pubmed. pdf.
2022
Zhang Y, Iiams SE, Menet JS, Hardin PE, Merlin C. (2022) TRITHORAX-dependent arginine methylation of HSP68 mediates circadian repression by PERIOD. Proc Natl Acad Sci U S A. 25;119(4):e2115711119. Pubmed. pdf.
Trott AJ, Greenwell BJ, Karhadkar TR, Guerrero-Vargas NN, Escobar C, Buijs RM, Menet JS#. (2022) Lack of food intake during shift work alters the heart transcriptome and leads to cardiac fibrosis in rats. BMC Biol. 20(1):58. Pubmed. pdf.
2020
Greenwell BJ, Beytebiere JR, Lamb T, Bell-Pedersen D, Merlin C, Menet JS. (2020) Isoform-specific regulation of rhythmic gene expression by alternative polyadenylation. Biorxiv. Biorxiv. pdf.
2019
Beytebiere JR, Trott AJ, Greenwell B, Osborne CA, Vitet H, Spence J, Yoo SH, Chen Z, Takahashi JS, Ghaffari N, Menet JS. (2019) Tissue-specific BMAL1 cistromes reveal that rhythmic transcription is associated with rhythmic enhancer-enhancer interactions. Genes Dev 33:294-309. Pubmed. pdf. Supplementary_files.
Greenwell BJ, Trott AJ, Beytebiere JR, Pao S, Bosley A, Beach E, Finegan P, Hernandez C, Menet JS. (2019) Rhythmic Food Intake Drives Rhythmic Gene Expression More Potently than the Hepatic Circadian Clock in Mice. Cell Rep. 27(3):649-657.e5. Pubmed. pdf.
Lugena AB, Zhang Y, Menet JS, Merlin C. (2019) Genome-wide discovery of the daily transcriptome, DNA regulatory elements and transcription factor occupancy in the monarch butterfly brain. PLoS Genet. 15(7):e1008265. Pubmed. pdf.
Beytebiere JR, Greenwell BJ, Sahasrabudhe A, Menet JS. (2019) Clock-controlled rhythmic transcription: is the clock enough and how does it work? Transcription. Oct 9:1-10. Pubmed. pdf.
2018
Trott AJ, Menet JS. (2018) Regulation of circadian clock transcriptional output by CLOCK:BMAL1. PLoS Genet 14(1). Pubmed. pdf.
2017
Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi B, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu J, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle III FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog HD, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO Johnson C, Kay SA, Koike N, Kornacker K, Kramer K, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow D, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB. (2017) Guidelines for genome-scale analysis of biological rhythms. J. Biol. Rhythms 32(5):380-393. Pubmed. pdf.
2015
Lerner I, Bartok O, Wolfson V, Menet JS, Weissbein U, Afik S, Haimovich D, Gafni C, Friedman N, Rosbash M, Kadener S. (2015) Clk post-transcriptional control denoises circadian transcription both temporally and spatially. Nat Commun 6:7056. Pubmed. pdf.
2014
Menet JS, Pescatore S, Rosbash M. (2014) CLOCK:BMAL1 is a pioneer-like transcription factor. Genes Dev 28(1):8-13. PMC3894415. Pubmed. pdf.
Menet JS, Hardin PE (2014) Circadian clocks: the tissue is the issue. Curr Biol 24(1):R25-7. Pubmed. pdf.
2013
Rodriguez J, Tang CH, Khodor YL, Vodala S, Menet JS, Rosbash M. (2013) Nascent-Seq analysis of Drosophila cycling gene expression. Proc Natl Acad Sci U S A 110(4):E275-84. PMC3557077. Pubmed. pdf.
2012
Rodriguez J, Menet JS, Rosbash M. (2012) Nascent-Seq indicates widespread cotranscriptional RNA editing in Drosophila. Mol Cell 47(1):27:37. PMC3409466. Pubmed. pdf.
Khodor YL, Menet JS, Tolan M, Rosbash M. (2012) Cotranscriptional splicing efficiency differs dramatically between Drosophila and mouse. RNA 18(12):2174-86. PMC3504670. Pubmed. pdf.
Menet JS, Rodriguez J, Abruzzi KC, Rosbash M. (2012) Nascent-Seq Reveals Novel Features of Mouse Circadian Transcriptional Regulation. eLife 1:e00011. PMC3492862. Pubmed. pdf.
2011
Abruzzi KC, Rodriguez J, Menet JS, Desrochers J, Zadina A, Luo W, Tkachev S, Rosbash M. (2011) Drosophila CLOCK target gene characterization: implications for circadian tissue-specific gene expression. Genes Dev 25(22):2374-86. PMC3222903. Pubmed. pdf.
Menet JS, Rosbash M (2011) When brain clocks lose track of time: cause or consequence of neuropsychiatric disorders. Curr Opin Neurobiol 21(6) 849-57. PMC3252427. Pubmed. pdf.
Menet JS, Rosbash M (2011) A New Twist on Clock Protein Phosphorylation: A Conformational Change Leads to Protein Degradation. Mol Cell 43(5):695-7. Pubmed. pdf.
2010
Menet JS, Abruzzi KA, Desrochers J, Rodriguez J, Rosbash M (2010) Dynamic PER repression in the Drosophila circadian clock: from on- to off-DNA. Genes Dev 24(4):358-67. PMC2816735. Pubmed. pdf.
2009
Kadener S, Menet JS, Sugino K, Horwich MD, Nawathean P, Vagin VV, Zamore PD, Nelson S, Rosbash M. (2009) A role for microRNAs in the Drosophila circadian clock. Genes Dev 23(18):2179-91. PMC2751990. Pubmed. pdf.
2008
Kadener S, Menet JS, Schoer R, Rosbash M (2008) Circadian Transcription Contributes to Core Period Determination in Drosophila. PLoS Biol 6(5):e119. PMC2386838. Pubmed. pdf.
2007
Stoleru D, Nawathean P, de la Paz Fernandez M, Menet JS, Ceriani MF, Rosbash M (2007) The Drosophila circadian network: a brain clock for all seasons. Cell 129(1):207-19. Pubmed. pdf.
Revel FG, Herwig A, Garidou ML, Dardente H, Menet JS , Masson-Pévet M, Simonneaux V, Saboureau M, Pévet P (2007) The circadian clock stops ticking during deep hibernation in the European hamster. Proc Natl Acad Sci U S A 104(34):13816-13820. PMC1959465. Pubmed. pdf.
Rosbash M, Bradley S, Kadener S, Li Y, Luo W, Menet JS, Nagoshi E, Palm K, Schoer R, Shang Y, Tang CH (2007) Transcriptional feedback and definition of the circadian pacemaker in Drosophila and animals. Cold Spring Harb Symp Quant Biol 72:75-83. Pubmed. pdf.
2005
Menet JS, Vuillez P, Bonn D, Senser A, Pévet P (2005) Conflicting effects of exercise on the establishment of a short-photoperiod phenotype in Syrian hamster. Am J Physio Regul Integr Comp Physiol 288(1):R234-242. Pubmed. pdf.
Nawathean P, Menet JS, Rosbash M (2005) Assaying the Drosophila negative feedback loop with RNAi in S2 cells. Methods Enzymol 393:610-622. Pubmed. pdf.
2004
Dardente H, Menet JS, Challet E, Tournier BB, Pévet P, Masson-Pévet M (2004) Daily and circadian expression of neuropeptides in the suprachiasmatic nuclei of nocturnal and diurnal rodents. Mol Brain Res 124(2):143-151. Pubmed. pdf.
Erhardt C, Galani R, Jeltsch H, Cassel JC, Klosen P, Menet JS, Pevet P, Challet E (2004) Modulation of photic resetting in rats by lesions of projections to the suprachiasmatic nuclei expressing p75 neurotrophin receptor. Eur J Neurosci 19(7):1773-1788. Pubmed. pdf.
2003
Tournier B, Menet JS, Dardente H, Poirel VJ, Masson-Pévet M, Pévet P, Vuillez P (2003) Photoperiod differentially regulates clock genes’ expression in the suprachiasmatic nucleus of golden hamster. Neuroscience 118(2): 317-322. Pubmed. pdf.
Menet JS, Vuillez P, Saboureau M, Pévet P (2003) Inhibition of hibernation by exercise is not affected by intergeniculate leaflets lesion in hamsters. Am J Physio Regul Integr Comp Physiol 285(3):R690-700. Pubmed. pdf.
Dardente H, Menet JS, Poirel VJ, Streicher D, Gauer F, Klosen P, Pévet P, Masson-Pévet M (2003) Melatonin induces Cry1 expression in the pars tuberalis of the rat. Mol Brain Res 114(2):101-106. Pubmed. pdf.
Menet JS, Vuillez P, Pévet P (2003) Calbindin expression in the hamster suprachiasmatic nucleus depends on day-length. Neuroscience 112(3): 591-598. Pubmed. pdf.
2001
Menet J, Vuillez P, Jacob N, Pévet P (2001) Intergeniculate leaflets lesion delays but does not prevent the integration of photoperiodic change by the suprachiasmatic nuclei. Brain Res 906: 176-179. Pubmed. pdf.